Version 8.0 Release Errata
Celera Assembler version 8.0 was released on November 5th, 2013.
These problems have been observed since release.
- Due to the increased maximum read length of 65kb, the unitig consensus module (utgcns) has a 16gb memory overhead. This is resolved in the CA 8.1 release.
- The pre-compiled CA binaries do not include SAMtool support. SAMtool support is required to use pacBioToCA self-correction. To compile CA 8.0 with SAMtools support, download the CA 8.0 | source code and follow these instructions. This is resolved in the CA 8.1 release.
% bzip2 -dc wgs-8.0.tar.bz2 | tar -xf - % cd wgs-8.0 % cd kmer % gmake install % cd .. % curl -L https://github.com/samtools/samtools/archive/0.1.19.tar.gz -o samtools.tar.gz % tar xvzf samtools.tar.gz % mv samtools-0.1.19 samtools % cd samtools % make % cd ../src % gmake % cd ..